PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10020125m
Common NameCICLE_v10020125mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 450aa    MW: 50636.1 Da    PI: 9.2818
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10020125mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.65.3e-065779123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     y+C++C++ F r  nL+ H r+H
  Ciclev10020125m 57 YVCEICNQGFQRDQNLQMHRRRH 79
                     9*********************9 PP

2zf-C2H2163.3e-05134156123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C++C+k +  +s++k H++t+
  Ciclev10020125m 134 WVCEKCSKGYAVQSDYKAHLKTC 156
                      58*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.78E-55480No hitNo description
Gene3DG3DSA:3.30.160.601.8E-55679IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.975779IPR007087Zinc finger, C2H2
SMARTSM003550.00525779IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805979IPR007087Zinc finger, C2H2
PROSITE patternPS01359059139IPR019786Zinc finger, PHD-type, conserved site
SMARTSM0035521098128IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.2E-4125155IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035560134161IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MLANNSPSAI PCSSEPFSCL ENGISHNKRK RRPAGTPDPD AEVVSLSPKT LLESDRYVCE  60
ICNQGFQRDQ NLQMHRRRHK VPWKLLKRET PVVRKRVFVC PEPSCLHHDP CHALGDLVGI  120
KKHFRRKHSN HKQWVCEKCS KGYAVQSDYK AHLKTCGTRG HSCDCGRVFS RVESFIEHQD  180
ACSKGHIRSE QQGLQQQPAA CLSRTASSPS PSSDTNFSAS HWPNLMVPKV PTIDTMFLNR  240
FHQGDKSTRN VKHHNLELQL LTTSNPIDVS DDSPKRDHDH NHSTQLQLSI GSSDISEKNE  300
LNVTYLSSTT NGKPAMDIAS RLKEQAREQL RLAMAEKACA EEARQAAKRQ IELAEQEFAN  360
AKRIRQQAQA ELDKAQALKE HAIKQINSTI LRVTCHACKQ QFQSRLPPDE NSLVLSYMSS  420
ATTEGEVNNR NNRTNHRLAK TVNLSNKSL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006441329.10.0hypothetical protein CICLE_v10020125mg
SwissprotF4IPE31e-151IDD15_ARATH; Protein SHOOT GRAVITROPISM 5
TrEMBLV4VNQ80.0V4VNQ8_9R
STRINGPOPTR_0012s03730.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69328131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68130.11e-138indeterminate(ID)-domain 14